sacCer3

Version: 2023-04-26

Category: igenomes

Description

The contents of this directory were downloaded from UCSC on: March 6, 2013

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/sacCer3/2023-04-26

Environment Variables

Variable Name

Value

sacCer3_fasta

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/WholeGenomeFasta/genome.fa

sacCer3_bwa

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BWAIndex/version0.6.0/

sacCer3_bowtie2

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/Bowtie2Index/

sacCer3_star

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/STARIndex/

sacCer3_bismark

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BismarkIndex/

sacCer3_readme

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Annotation/README.txt

sacCer3_mito_name

chrM

sacCer3_macs_gsize

1.2e7

sacCer3_HOME

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3

RCAC_sacCer3_ROOT

/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3

RCAC_sacCer3_VERSION

2023-04-26