panTro4

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/panTro4/2023-04-26

Environment Variables

Variable Name	Value
panTro4_fasta	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Sequence/WholeGenomeFasta/genome.fa
panTro4_bwa	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Sequence/BWAIndex/version0.6.0/
panTro4_bowtie2	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Sequence/Bowtie2Index/
panTro4_star	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Sequence/STARIndex/
panTro4_bismark	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Sequence/BismarkIndex/
panTro4_gtf	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Annotation/Genes/genes.gtf
panTro4_bed12	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Annotation/Genes/genes.bed
panTro4_readme	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4/Annotation/README.txt
panTro4_mito_name	chrM
panTro4_HOME	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4
RCAC_panTro4_ROOT	/anvil/datasets/igenomes/Pan_troglodytes/UCSC/panTro4
RCAC_panTro4_VERSION	2023-04-26