ce10

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/ce10/2023-04-26

Environment Variables

Variable Name

Value

ce10_fasta

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Sequence/WholeGenomeFasta/genome.fa

ce10_bwa

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Sequence/BWAIndex/version0.6.0/

ce10_bowtie2

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Sequence/Bowtie2Index/

ce10_star

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Sequence/STARIndex/

ce10_bismark

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Sequence/BismarkIndex/

ce10_gtf

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Annotation/Genes/genes.gtf

ce10_bed12

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Annotation/Genes/genes.bed

ce10_readme

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10/Annotation/README.txt

ce10_mito_name

chrM

ce10_macs_gsize

9e7

ce10_HOME

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10

RCAC_ce10_ROOT

/anvil/datasets/igenomes/Caenorhabditis_elegans/UCSC/ce10

RCAC_ce10_VERSION

2023-04-26