mm10

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/mm10/2023-04-26

Environment Variables

Variable Name

Value

mm10_fasta

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa

mm10_bwa

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Sequence/BWAIndex/version0.6.0/

mm10_bowtie2

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Sequence/Bowtie2Index/

mm10_star

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Sequence/STARIndex/

mm10_bismark

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Sequence/BismarkIndex/

mm10_gtf

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Annotation/Genes/genes.gtf

mm10_bed12

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Annotation/Genes/genes.bed

mm10_readme

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10/Annotation/README.txt

mm10_mito_name

chrM

mm10_macs_gsize

1.87e9

mm10_HOME

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10

RCAC_mm10_ROOT

/anvil/datasets/igenomes/Mus_musculus/UCSC/mm10

RCAC_mm10_VERSION

2023-04-26