GRCh38

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/GRCh38/2023-04-26

Environment Variables

Variable Name

Value

GRCh38_fasta

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa

GRCh38_bwa

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/BWAIndex/version0.6.0/

GRCh38_bowtie2

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/Bowtie2Index/

GRCh38_star

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/STARIndex/

GRCh38_bismark

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/BismarkIndex/

GRCh38_gtf

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.gtf

GRCh38_bed12

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.bed

GRCh38_mito_name

chrM

GRCh38_macs_gsize

2.7e9

GRCh38_HOME

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38

RCAC_GRCh38_ROOT

/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38

RCAC_GRCh38_VERSION

2023-04-26