EB2

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from EnsemblGenomes release 27.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/EB2/2023-04-26

Environment Variables

Variable Name

Value

EB2_fasta

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Sequence/WholeGenomeFasta/genome.fa

EB2_bwa

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Sequence/BWAIndex/version0.6.0/

EB2_bowtie2

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Sequence/Bowtie2Index/

EB2_star

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Sequence/STARIndex/

EB2_bismark

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Sequence/BismarkIndex/

EB2_gtf

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Annotation/Genes/genes.gtf

EB2_bed12

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Annotation/Genes/genes.bed

EB2_readme

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2/Annotation/README.txt

EB2_HOME

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2

RCAC_EB2_ROOT

/anvil/datasets/igenomes/Bacillus_subtilis_168/Ensembl/EB2

RCAC_EB2_VERSION

2023-04-26