Mmul_1

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from Ensembl release 81. SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/Mmul_1/2023-04-26

Environment Variables

Variable Name

Value

Mmul1_fasta

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Sequence/WholeGenomeFasta/genome.fa

Mmul1_bwa

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Sequence/BWAIndex/version0.6.0/

Mmul1_bowtie2

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Sequence/Bowtie2Index/

Mmul1_star

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Sequence/STARIndex/

Mmul1_bismark

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Sequence/BismarkIndex/

Mmul1_gtf

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Annotation/Genes/genes.gtf

Mmul1_bed12

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Annotation/Genes/genes.bed

Mmul1_readme

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1/Annotation/README.txt

Mmul1_mito_name

MT

Mmul_1_HOME

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1

RCAC_Mmul_1_ROOT

/anvil/datasets/igenomes/Macaca_mulatta/Ensembl/Mmul_1

RCAC_Mmul_1_VERSION

2023-04-26