Rnor_5.0

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/Rnor_5.0/2023-04-26

Environment Variables

Variable Name

Value

Rnor50_fasta

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Sequence/WholeGenomeFasta/genome.fa

Rnor50_bwa

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Sequence/BWAIndex/version0.6.0/

Rnor50_bowtie2

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Sequence/Bowtie2Index/

Rnor50_star

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Sequence/STARIndex/

Rnor50_bismark

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Sequence/BismarkIndex/

Rnor50_gtf

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Annotation/Genes/genes.gtf

Rnor50_bed12

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0/Annotation/Genes/genes.bed

Rnor50_mito_name

MT

Rnor_5.0_HOME

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0

RCAC_Rnor_5.0_ROOT

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_5.0

RCAC_Rnor_5.0_VERSION

2023-04-26