GRCh37

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from Ensembl release 75. SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/GRCh37/2023-04-26

Environment Variables

Variable Name

Value

GRCh37_fasta

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/WholeGenomeFasta/genome.fa

GRCh37_bwa

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/BWAIndex/version0.6.0/

GRCh37_bowtie2

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/Bowtie2Index/

GRCh37_star

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/STARIndex/

GRCh37_bismark

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/BismarkIndex/

GRCh37_gtf

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Annotation/Genes/genes.gtf

GRCh37_bed12

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Annotation/Genes/genes.bed

GRCh37_readme

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37/Annotation/README.txt

GRCh37_mito_name

MT

GRCh37_macs_gsize

2.7e9

GRCh37_HOME

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37

RCAC_GRCh37_ROOT

/anvil/datasets/igenomes/Homo_sapiens/Ensembl/GRCh37

RCAC_GRCh37_VERSION

2023-04-26