hg19

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/hg19/2023-04-26

Environment Variables

Variable Name

Value

hg19_fasta

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa

hg19_bwa

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/

hg19_bowtie2

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/

hg19_star

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Sequence/STARIndex/

hg19_bismark

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Sequence/BismarkIndex/

hg19_gtf

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Annotation/Genes/genes.gtf

hg19_bed12

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Annotation/Genes/genes.bed

hg19_readme

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19/Annotation/README.txt

hg19_mito_name

chrM

hg19_macs_gsize

2.7e9

hg19_HOME

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19

RCAC_hg19_ROOT

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg19

RCAC_hg19_VERSION

2023-04-26