=======
sacCer3
=======

Version: 2023-04-26

Category: **igenomes**

Description
-----------

The contents of this directory were downloaded from UCSC on: March 6, 2013

Usage
-----

To find and load available datasets::

    $ module avail
    $ module load datasets
    $ module load igenomes/sacCer3/2023-04-26
Environment Variables
-------------------

.. list-table::
   :header-rows: 1
   :widths: 25 75

   * - **Variable Name**
     - **Value**
   * - ``sacCer3_fasta``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/WholeGenomeFasta/genome.fa``
   * - ``sacCer3_bwa``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BWAIndex/version0.6.0/``
   * - ``sacCer3_bowtie2``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/Bowtie2Index/``
   * - ``sacCer3_star``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/STARIndex/``
   * - ``sacCer3_bismark``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BismarkIndex/``
   * - ``sacCer3_readme``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3/Annotation/README.txt``
   * - ``sacCer3_mito_name``
     - ``chrM``
   * - ``sacCer3_macs_gsize``
     - ``1.2e7``
   * - ``sacCer3_HOME``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3``
   * - ``RCAC_sacCer3_ROOT``
     - ``/anvil/datasets/igenomes/Saccharomyces_cerevisiae/UCSC/sacCer3``
   * - ``RCAC_sacCer3_VERSION``
     - ``2023-04-26``