rn6

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/rn6/2023-04-26

Environment Variables

Variable Name

Value

rn6_fasta

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Sequence/WholeGenomeFasta/genome.fa

rn6_bwa

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Sequence/BWAIndex/version0.6.0/

rn6_bowtie2

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Sequence/Bowtie2Index/

rn6_star

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Sequence/STARIndex/

rn6_bismark

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Sequence/BismarkIndex/

rn6_gtf

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Annotation/Genes/genes.gtf

rn6_bed12

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6/Annotation/Genes/genes.bed

rn6_mito_name

chrM

rn6_HOME

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6

RCAC_rn6_ROOT

/anvil/datasets/igenomes/Rattus_norvegicus/UCSC/rn6

RCAC_rn6_VERSION

2023-04-26