Rnor_6.0

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/Rnor_6.0/2023-04-26

Environment Variables

Variable Name

Value

Rnor60_fasta

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Sequence/WholeGenomeFasta/genome.fa

Rnor60_bwa

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Sequence/BWAIndex/version0.6.0/

Rnor60_bowtie2

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Sequence/Bowtie2Index/

Rnor60_star

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Sequence/STARIndex/

Rnor60_bismark

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Sequence/BismarkIndex/

Rnor60_gtf

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Annotation/Genes/genes.gtf

Rnor60_bed12

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0/Annotation/Genes/genes.bed

Rnor60_mito_name

MT

Rnor_6.0_HOME

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0

RCAC_Rnor_6.0_ROOT

/anvil/datasets/igenomes/Rattus_norvegicus/Ensembl/Rnor_6.0

RCAC_Rnor_6.0_VERSION

2023-04-26