bosTau8

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/bosTau8/2023-04-26

Environment Variables

Variable Name

Value

bosTau8_fasta

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Sequence/WholeGenomeFasta/genome.fa

bosTau8_bwa

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Sequence/BWAIndex/version0.6.0/

bosTau8_bowtie2

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Sequence/Bowtie2Index/

bosTau8_star

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Sequence/STARIndex/

bosTau8_bismark

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Sequence/BismarkIndex/

bosTau8_gtf

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Annotation/Genes/genes.gtf

bosTau8_bed12

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8/Annotation/Genes/genes.bed

bosTau8_mito_name

chrM

bosTau8_HOME

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8

RCAC_bosTau8_ROOT

/anvil/datasets/igenomes/Bos_taurus/UCSC/bosTau8

RCAC_bosTau8_VERSION

2023-04-26