WBcel235

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/WBcel235/2023-04-26

Environment Variables

Variable Name

Value

WBcel235_fasta

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/WholeGenomeFasta/genome.fa

WBcel235_bwa

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/BWAIndex/version0.6.0/

WBcel235_bowtie2

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/Bowtie2Index/

WBcel235_star

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/STARIndex/

WBcel235_bismark

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/BismarkIndex/

WBcel235_gtf

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Annotation/Genes/genes.gtf

WBcel235_bed12

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235/Annotation/Genes/genes.bed

WBcel235_mito_name

MtDNA

WBcel235_macs_gsize

9e7

WBcel235_HOME

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235

RCAC_WBcel235_ROOT

/anvil/datasets/igenomes/Caenorhabditis_elegans/Ensembl/WBcel235

RCAC_WBcel235_VERSION

2023-04-26