CHIMP2.1.4

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from Ensembl release 81. SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/CHIMP2.1.4/2023-04-26

Environment Variables

Variable Name

Value

CHIMP214_fasta

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/WholeGenomeFasta/genome.fa

CHIMP214_bwa

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BWAIndex/version0.6.0/

CHIMP214_bowtie2

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/Bowtie2Index/

CHIMP214_star

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/STARIndex/

CHIMP214_bismark

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BismarkIndex/

CHIMP214_gtf

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Genes/genes.gtf

CHIMP214_bed12

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Genes/genes.bed

CHIMP214_readme

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/README.txt

CHIMP214_mito_name

MT

CHIMP2.1.4_HOME

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4

RCAC_CHIMP2.1.4_ROOT

/anvil/datasets/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4

RCAC_CHIMP2.1.4_VERSION

2023-04-26