galGal4

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/galGal4/2023-04-26

Environment Variables

Variable Name

Value

galGal4_fasta

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Sequence/WholeGenomeFasta/genome.fa

galGal4_bwa

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Sequence/BWAIndex/version0.6.0/

galGal4_bowtie2

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Sequence/Bowtie2Index/

galGal4_star

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Sequence/STARIndex/

galGal4_bismark

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Sequence/BismarkIndex/

galGal4_gtf

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Annotation/Genes/genes.gtf

galGal4_bed12

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Annotation/Genes/genes.bed

galGal4_readme

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4/Annotation/README.txt

galGal4_mito_name

chrM

galGal4_HOME

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4

RCAC_galGal4_ROOT

/anvil/datasets/igenomes/Gallus_gallus/UCSC/galGal4

RCAC_galGal4_VERSION

2023-04-26