EF2

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Annotation files in this directory and subdirectories were downloaded from EnsemblGenomes release 27. Ensembl now uses the name ‘ASM294v2, May 2009’ for this assembly.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/EF2/2023-04-26

Environment Variables

Variable Name

Value

EF2_fasta

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Sequence/WholeGenomeFasta/genome.fa

EF2_bwa

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Sequence/BWAIndex/version0.6.0/

EF2_bowtie2

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Sequence/Bowtie2Index/

EF2_star

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Sequence/STARIndex/

EF2_bismark

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Sequence/BismarkIndex/

EF2_gtf

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Annotation/Genes/genes.gtf

EF2_bed12

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Annotation/Genes/genes.bed

EF2_readme

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2/Annotation/README.txt

EF2_mito_name

MT

EF2_macs_gsize

1.21e7

EF2_HOME

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2

RCAC_EF2_ROOT

/anvil/datasets/igenomes/Schizosaccharomyces_pombe/Ensembl/EF2

RCAC_EF2_VERSION

2023-04-26