dm6

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/dm6/2023-04-26

Environment Variables

Variable Name

Value

dm6_fasta

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Sequence/WholeGenomeFasta/genome.fa

dm6_bwa

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Sequence/BWAIndex/version0.6.0/

dm6_bowtie2

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Sequence/Bowtie2Index/

dm6_star

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Sequence/STARIndex/

dm6_bismark

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Sequence/BismarkIndex/

dm6_gtf

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Annotation/Genes/genes.gtf

dm6_bed12

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6/Annotation/Genes/genes.bed

dm6_mito_name

chrM

dm6_macs_gsize

1.2e8

dm6_HOME

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6

RCAC_dm6_ROOT

/anvil/datasets/igenomes/Drosophila_melanogaster/UCSC/dm6

RCAC_dm6_VERSION

2023-04-26