AGPv3

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/AGPv3/2023-04-26

Environment Variables

Variable Name

Value

AGPv3_fasta

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/WholeGenomeFasta/genome.fa

AGPv3_bwa

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.6.0/

AGPv3_bowtie2

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/

AGPv3_star

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/STARIndex/

AGPv3_bismark

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BismarkIndex/

AGPv3_gtf

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Genes/genes.gtf

AGPv3_bed12

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Genes/genes.bed

AGPv3_mito_name

Mt

AGPv3_HOME

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3

RCAC_AGPv3_ROOT

/anvil/datasets/igenomes/Zea_mays/Ensembl/AGPv3

RCAC_AGPv3_VERSION

2023-04-26