CanFam3.1

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from Ensembl release 81. SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/CanFam3.1/2023-04-26

Environment Variables

Variable Name

Value

CanFam31_fasta

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Sequence/WholeGenomeFasta/genome.fa

CanFam31_bwa

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Sequence/BWAIndex/version0.6.0/

CanFam31_bowtie2

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Sequence/Bowtie2Index/

CanFam31_star

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Sequence/STARIndex/

CanFam31_bismark

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Sequence/BismarkIndex/

CanFam31_gtf

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Annotation/Genes/genes.gtf

CanFam31_bed12

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Annotation/Genes/genes.bed

CanFam31_readme

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1/Annotation/README.txt

CanFam31_mito_name

MT

CanFam3.1_HOME

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1

RCAC_CanFam3.1_ROOT

/anvil/datasets/igenomes/Canis_familiaris/Ensembl/CanFam3.1

RCAC_CanFam3.1_VERSION

2023-04-26