EB1

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from EnsemblGenomes release 27. Ensembl now uses the name ‘ASM1942v1, June 2008’ for this assembly.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/EB1/2023-04-26

Environment Variables

Variable Name

Value

EB1_fasta

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Sequence/WholeGenomeFasta/genome.fa

EB1_bwa

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Sequence/BWAIndex/version0.6.0/

EB1_bowtie2

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Sequence/Bowtie2Index/

EB1_star

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Sequence/STARIndex/

EB1_bismark

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Sequence/BismarkIndex/

EB1_gtf

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Annotation/Genes/genes.gtf

EB1_bed12

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Annotation/Genes/genes.bed

EB1_readme

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1/Annotation/README.txt

EB1_HOME

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1

RCAC_EB1_ROOT

/anvil/datasets/igenomes/Escherichia_coli_K_12_DH10B/Ensembl/EB1

RCAC_EB1_VERSION

2023-04-26