hg38

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/hg38/2023-04-26

Environment Variables

Variable Name

Value

hg38_fasta

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Sequence/WholeGenomeFasta/genome.fa

hg38_bwa

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Sequence/BWAIndex/version0.6.0/

hg38_bowtie2

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Sequence/Bowtie2Index/

hg38_star

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Sequence/STARIndex/

hg38_bismark

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Sequence/BismarkIndex/

hg38_gtf

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Annotation/Genes/genes.gtf

hg38_bed12

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38/Annotation/Genes/genes.bed

hg38_mito_name

chrM

hg38_macs_gsize

2.7e9

hg38_HOME

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38

RCAC_hg38_ROOT

/anvil/datasets/igenomes/Homo_sapiens/UCSC/hg38

RCAC_hg38_VERSION

2023-04-26