Galgal4

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/Galgal4/2023-04-26

Environment Variables

Variable Name

Value

Galgal4_fasta

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Sequence/WholeGenomeFasta/genome.fa

Galgal4_bwa

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Sequence/BWAIndex/version0.6.0/

Galgal4_bowtie2

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Sequence/Bowtie2Index/

Galgal4_star

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Sequence/STARIndex/

Galgal4_bismark

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Sequence/BismarkIndex/

Galgal4_gtf

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Annotation/Genes/genes.gtf

Galgal4_bed12

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4/Annotation/Genes/genes.bed

Galgal4_mito_name

MT

Galgal4_HOME

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4

RCAC_Galgal4_ROOT

/anvil/datasets/igenomes/Gallus_gallus/Ensembl/Galgal4

RCAC_Galgal4_VERSION

2023-04-26