equCab2

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from UCSC on: July 17, 2015.

SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/equCab2/2023-04-26

Environment Variables

Variable Name

Value

equCab2_fasta

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Sequence/WholeGenomeFasta/genome.fa

equCab2_bwa

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Sequence/BWAIndex/version0.6.0/

equCab2_bowtie2

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Sequence/Bowtie2Index/

equCab2_star

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Sequence/STARIndex/

equCab2_bismark

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Sequence/BismarkIndex/

equCab2_gtf

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Annotation/Genes/genes.gtf

equCab2_bed12

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Annotation/Genes/genes.bed

equCab2_readme

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2/Annotation/README.txt

equCab2_mito_name

chrM

equCab2_HOME

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2

RCAC_equCab2_ROOT

/anvil/datasets/igenomes/Equus_caballus/UCSC/equCab2

RCAC_equCab2_VERSION

2023-04-26