IRGSP-1.0

Version: 2023-04-26

Category: igenomes

Description

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/IRGSP-1.0/2023-04-26

Environment Variables

Variable Name

Value

IRGSP10_fasta

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Sequence/WholeGenomeFasta/genome.fa

IRGSP10_bwa

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Sequence/BWAIndex/version0.6.0/

IRGSP10_bowtie2

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Sequence/Bowtie2Index/

IRGSP10_star

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Sequence/STARIndex/

IRGSP10_bismark

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Sequence/BismarkIndex/

IRGSP10_gtf

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Annotation/Genes/genes.gtf

IRGSP10_bed12

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0/Annotation/Genes/genes.bed

IRGSP10_mito_name

Mt

IRGSP-1.0_HOME

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0

RCAC_IRGSP-1.0_ROOT

/anvil/datasets/igenomes/Oryza_sativa_japonica/Ensembl/IRGSP-1.0

RCAC_IRGSP-1.0_VERSION

2023-04-26