Sbi1

Version: 2023-04-26

Category: igenomes

Description

The contents of the annotation directories were downloaded from Ensembl on: July 17, 2015.

Gene annotation files were downloaded from EnsemblGenomes release 27. Ensembl now uses the name ‘Sorbi1, Dec 2007’ for this assembly. SmallRNA annotation files were downloaded from miRBase release 21.

Usage

To find and load available datasets:

$ module avail
$ module load datasets
$ module load igenomes/Sbi1/2023-04-26

Environment Variables

Variable Name

Value

Sbi1_fasta

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Sequence/WholeGenomeFasta/genome.fa

Sbi1_bwa

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Sequence/BWAIndex/version0.6.0/

Sbi1_bowtie2

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Sequence/Bowtie2Index/

Sbi1_star

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Sequence/STARIndex/

Sbi1_bismark

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Sequence/BismarkIndex/

Sbi1_gtf

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Annotation/Genes/genes.gtf

Sbi1_bed12

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Annotation/Genes/genes.bed

Sbi1_readme

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1/Annotation/README.txt

Sbi1_HOME

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1

RCAC_Sbi1_ROOT

/anvil/datasets/igenomes/Sorghum_bicolor/Ensembl/Sbi1

RCAC_Sbi1_VERSION

2023-04-26