======
GRCh38
======

Version: 2023-04-26

Category: **igenomes**

Description
-----------



Usage
-----

To find and load available datasets::

    $ module avail
    $ module load datasets
    $ module load igenomes/GRCh38/2023-04-26
Environment Variables
-------------------

.. list-table::
   :header-rows: 1
   :widths: 25 75

   * - **Variable Name**
     - **Value**
   * - ``GRCh38_fasta``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa``
   * - ``GRCh38_bwa``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/BWAIndex/version0.6.0/``
   * - ``GRCh38_bowtie2``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/Bowtie2Index/``
   * - ``GRCh38_star``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/STARIndex/``
   * - ``GRCh38_bismark``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/BismarkIndex/``
   * - ``GRCh38_gtf``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.gtf``
   * - ``GRCh38_bed12``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/genes.bed``
   * - ``GRCh38_mito_name``
     - ``chrM``
   * - ``GRCh38_macs_gsize``
     - ``2.7e9``
   * - ``GRCh38_HOME``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38``
   * - ``RCAC_GRCh38_ROOT``
     - ``/anvil/datasets/igenomes/Homo_sapiens/NCBI/GRCh38``
   * - ``RCAC_GRCh38_VERSION``
     - ``2023-04-26``