========
danRer10
========

Version: 2023-04-26

Category: **igenomes**

Description
-----------



Usage
-----

To find and load available datasets::

    $ module avail
    $ module load datasets
    $ module load igenomes/danRer10/2023-04-26
Environment Variables
-------------------

.. list-table::
   :header-rows: 1
   :widths: 25 75

   * - **Variable Name**
     - **Value**
   * - ``danRer10_fasta``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Sequence/WholeGenomeFasta/genome.fa``
   * - ``danRer10_bwa``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Sequence/BWAIndex/version0.6.0/``
   * - ``danRer10_bowtie2``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Sequence/Bowtie2Index/``
   * - ``danRer10_star``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Sequence/STARIndex/``
   * - ``danRer10_bismark``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Sequence/BismarkIndex/``
   * - ``danRer10_gtf``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Annotation/Genes/genes.gtf``
   * - ``danRer10_bed12``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10/Annotation/Genes/genes.bed``
   * - ``danRer10_mito_name``
     - ``chrM``
   * - ``danRer10_macs_gsize``
     - ``1.37e9``
   * - ``danRer10_HOME``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10``
   * - ``RCAC_danRer10_ROOT``
     - ``/anvil/datasets/igenomes/Danio_rerio/UCSC/danRer10``
   * - ``RCAC_danRer10_VERSION``
     - ``2023-04-26``